PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_FA861D610.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 233aa    MW: 24940.4 Da    PI: 4.7963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_FA861D610.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-172271255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Traes_6DL_FA861D610.2 22 KYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVCLRG 71
                           8*****998.**********933...5*********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-272184IPR001471AP2/ERF domain
SMARTSM003802.3E-292288IPR001471AP2/ERF domain
PROSITE profilePS5103221.7992282IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-182284IPR016177DNA-binding domain
PfamPF008471.1E-92270IPR001471AP2/ERF domain
CDDcd000181.21E-242284No hitNo description
PRINTSPR003678.7E-92334IPR001471AP2/ERF domain
PRINTSPR003678.7E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTSSPASGA ASPEAEGGGG RKYKGVRRRK WGKWVSEIRL PNSRERIWLG SYDAPEKAAR  60
AFDAAFVCLR GPGAAGADLN FPDSPPPPCR HSVDPQEVQA AALSHANRAA VSAREAAAAL  120
MDVADDCFSR APAALSTDQW SVTQPSWAQH ENGAMDIFGD EVAAAPDGSI DWRSVMAHQP  180
PLFSPTAGWG SNAYDFLQVT PPPPQGDEDM EECGHGASAS LWSFDSRDSY FRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042573e-79AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149583e-79AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182589.11e-168ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A3B6QIZ81e-168A0A3B6QIZ8_WHEAT; Uncharacterized protein
STRINGTraes_6DL_FA861D610.21e-169(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.16e-22ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]