PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_EF6D5D4FA.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Dof
Protein Properties Length: 306aa    MW: 32457.8 Da    PI: 8.1325
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_EF6D5D4FA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.2e-4060120262
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            +++ lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s
  Traes_6DL_EF6D5D4FA.1  60 HDQPLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 120
                            7899******************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3158118IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3361118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.35764118IPR003851Zinc finger, Dof-type
PROSITE patternPS01361066102IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMAGAAHPMH FCMDSDWLKG IVPEDQGGMG SSSPSGELII ACPEPMQAQQ AADRRLRPQH  60
DQPLKCPRCD STHTKFCYYN NYSLSQPRYF CKTCRRYWTK GGSLRNVPVG GGCRKNKRAS  120
AAKKPSAAAA IAPPISMMQQ LHHGRHMAET GLHLSFSGMP PPPVSAADPL CSLGLFDWKY  180
DHILSGSGGF ESANSEAHFT GPGMMGIANG SGGGGAEYHA LNALRYAAGL GEHLALPFGG  240
ATSRAERDSV VAEMKPQAER LLSLEWCGEA SRAPTETSIS SLGGLGLWSG MVTGAAHHHH  300
GSSAAI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763880.0AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196058.10.0dof zinc finger protein DOF1.6-like
TrEMBLA0A3B6QJZ50.0A0A3B6QJZ5_WHEAT; Uncharacterized protein
TrEMBLA0A453PDK30.0A0A453PDK3_AEGTS; Uncharacterized protein
STRINGTraes_6DL_EF6D5D4FA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47043263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-40Dof family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]