PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_BA85EE462.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 92aa    MW: 10590.4 Da    PI: 11.5272
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_BA85EE462.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57357.53.8e-1827913497
                 DUF573 34 idafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97
                           +  fye +++++sf++ k+ql+eK+rrLKkK++ + ++ a++g  ++f++ h+  i+++ + iW+
  Traes_6DL_BA85EE462.1 27 TGPFYEEIRRKLSFDFYKNQLIEKLRRLKKKYRVCATRmAAQGAAFAFKSVHEGAIYDVVRHIWR 91
                           678**********************************9889***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.2E-172790IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
DGRGGAAHPA RVPRVHVALG LRLRVATGPF YEEIRRKLSF DFYKNQLIEK LRRLKKKYRV  60
CATRMAAQGA AFAFKSVHEG AIYDVVRHIW RP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764054e-98AK376405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123A01.
GenBankAK3738134e-98AK373813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168973.14e-34uncharacterized protein LOC100382800
TrEMBLW5GZ404e-62W5GZ40_WHEAT; Uncharacterized protein
STRINGMLOC_76252.19e-39(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-19DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]