PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_6DC75B590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 381aa    MW: 41332.9 Da    PI: 7.3725
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_6DC75B590.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-16101152155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Traes_6DL_6DC75B590.1 101 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 152
                            89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.337266IPR001471AP2/ERF domain
SMARTSM003803.5E-62272IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-93068IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-93166IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-18101162IPR016177DNA-binding domain
PfamPF008471.4E-10101152IPR001471AP2/ERF domain
CDDcd000182.61E-24101162No hitNo description
SMARTSM003808.1E-34102166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18102161IPR001471AP2/ERF domain
PROSITE profilePS5103219.467102160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MCYLSIISRV ASTLYMTASP SPLGMILYRP RQSVYLGGYD KEDKAARAYD LAALKYWGTT  60
TTTNFPINTY EKEVDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG  120
RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKTIL ESSTLPVGGA  180
ARRLKEAADH PEAGATIWRA GMDGAIISQL TDVGMGAYAS YHHGWPTIAF QQPSPLSVHY  240
PYVAQPPRGW CKPEQDATVA TQSLQDLQQL HLGTAAHNYF QASSSSTVYN GGGVGGYQQG  300
TGGNAFLMPA STVVDEQGHS STAANQGSTC SYGDEEGKLN LGYDAMAMAS TGADPYAAAS  360
TVSIARANGY SNNWSSPFSG M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183326.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A453P3710.0A0A453P371_AEGTS; Uncharacterized protein
STRINGTraes_6DL_6DC75B590.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-85AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]