PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_4C3F04219.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRF
Protein Properties Length: 414aa    MW: 45263.9 Da    PI: 7.6819
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_4C3F04219.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-2493136144
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                            d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  Traes_6DL_4C3F04219.1  93 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 136
                            79***************************************998 PP

2QLQ62.79.8e-222156237
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                           +FTa+Q+q+L++Q+l+yKy+a+++P+P++Ll+++++
  Traes_6DL_4C3F04219.1 21 PFTATQWQELEHQALIYKYMASGVPIPSDLLLPLRR 56
                           9********************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-112056IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-152154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4252156IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.57393137IPR014977WRC domain
PfamPF088792.3E-2094136IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MMMMGGRAGA GGVGAGGGRC PFTATQWQEL EHQALIYKYM ASGVPIPSDL LLPLRRSFLL  60
DSALATSPSL AFPPQAALGW GCFGMGFGRK AEDPEPGRCR RTDGKKWRCS KEAYPDSKYC  120
EKHMHRGKNR SRKPVEMSLA TPPPPPSSSA SSSSSNVHSA VNVATTTSSP APSYHRHAAA  180
THDTTPYHAL YGGPYSSAGR QQHASAYHHA AQVSPFHLHL DTTHPHPPPS YYSSMDHSKD  240
SYAYGHSVKE VHGGGEHAFF SSDVTTDRDH HHHHHQHQHH ASAGGNGQWQ FKQLGGMEPK  300
QHNPTSLFPG CGGYGNNAAY AIDLSSKEED EEKERRQQQQ HCFLLGADLR LDKPSSGHGD  360
SADQKPLRPF FDEWPHEKTG SKGSWMGLEG ETQLSISIAN ELPITTTSRY HHGE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538130.0AK353813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156076.10.0growth-regulating factor 1-like isoform X1
SwissprotQ6AWY81e-170GRF1_ORYSJ; Growth-regulating factor 1
TrEMBLA0A453PRH30.0A0A453PRH3_AEGTS; Uncharacterized protein
TrEMBLW5GW320.0W5GW32_WHEAT; Growth regulating factor 1-D1
STRINGTraes_6DL_4C3F04219.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.16e-46growth-regulating factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]