PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_2BAA4B7AA.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 375aa    MW: 41077.6 Da    PI: 5.5704
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_2BAA4B7AA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.8e-11189248155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GV++++++g+++A+++d  +   g  ++ k+    +++t+++Aa+a++ a++k++g
  Traes_6DL_2BAA4B7AA.1 189 SCFHGVTRHRWSGKYEAHLWDsTCRvEGrrRKgKQGKKRSYDTEQKAARAYDVAALKFFG 248
                            789******************7777866663369999999***99***********9986 PP

2AP248.71.8e-15291342155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++ k+grW A+I       g ++ ++lg+f t+eeAa+a++ a+ +++g
  Traes_6DL_2BAA4B7AA.1 291 SIYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 342
                            57****************88832...2.5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-12189258IPR016177DNA-binding domain
PfamPF008471.5E-7189246IPR001471AP2/ERF domain
SMARTSM003809.5E-17190262IPR001471AP2/ERF domain
PROSITE profilePS5103215.488190256IPR001471AP2/ERF domain
CDDcd000189.53E-14191258No hitNo description
Gene3DG3DSA:3.30.730.103.1E-10191256IPR001471AP2/ERF domain
PRINTSPR003671.5E-5191202IPR001471AP2/ERF domain
CDDcd000181.04E-22291350No hitNo description
SuperFamilySSF541712.35E-17291352IPR016177DNA-binding domain
PfamPF008471.5E-9291342IPR001471AP2/ERF domain
SMARTSM003802.7E-27292356IPR001471AP2/ERF domain
PROSITE profilePS5103218.624292350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-19292351IPR001471AP2/ERF domain
PRINTSPR003671.5E-5332352IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMKSGEEVSQ GQQMNGFVEE KAAGESGDGR KIERSPSINL NSLPAIAPAT TEIGVLHCAV  60
ESEANDASTQ KGDESSGTDQ KKVPKNEEVD EGEVQACADV KSHSVDPLNS ENHAGEKDAL  120
VTVPENEGCA DGGDNYKGVQ VLSIVKKDES EEIVDSINPV TVAEYREEKG TAGSTSAITA  180
VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQGKKRSYD TEQKAARAYD  240
VAALKFFGLN TKLNFSISEY EKELADIQDM SPEECVTYLR RRSSCFSRGA SIYRGVTRRQ  300
KDGRWQARIG LIAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH  360
CIEGAGLKLL ATKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215222GRRRKGKQ
2279300RRRSSCFSRGASIYRGVTRRQK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529820.0AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153211.10.0AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_020174447.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ6PQQ31e-73AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3B6QL260.0A0A3B6QL26_WHEAT; Uncharacterized protein
TrEMBLA0A453PJX90.0A0A453PJX9_AEGTS; Uncharacterized protein
STRINGTraes_6DL_2BAA4B7AA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.17e-60AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]