PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_5AA3D02B3.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 231aa    MW: 25344.7 Da    PI: 7.0704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_5AA3D02B3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.9e-0512283955
                           TCHHHHHHHHHHHHHHH CS
                    HLH 39 sKaeiLekAveYIksLq 55
                           +Ka++L  A+eY+k+Lq
  Traes_6BL_5AA3D02B3.2 12 DKASMLDDAIEYLKHLQ 28
                           8***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-71047IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-41032No hitNo description
Gene3DG3DSA:4.10.280.105.8E-71040IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAGAGGGWLQ TDKASMLDDA IEYLKHLQLQ VQMLSMRNGV YRPSVNLPGA PDHLPTSQMC  60
AALNQNSVDA SSNRPAAMLP MSHFLGAMSG TRHPFGPPNQ DRPRHEPLVL SSVPCTTTRE  120
PPFLLGPSQE SPLRSLQLTL PAEMIFQEEA MLKHRLSSTQ ETTSMPVGHE IKQPVRQETP  180
AERAGHFDAC SIWKNQSHDM TPNNPESVLF APHFRRFGSG TADSGLRAES K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606560.0AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235938.14e-72PREDICTED: transcription factor SPATULA-like
TrEMBLW5GJR31e-172W5GJR3_WHEAT; Uncharacterized protein
STRINGMLOC_65463.11e-129(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-12bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]