PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_340C2A897.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 375aa    MW: 40946.4 Da    PI: 5.8599
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_340C2A897.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15189248155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+++Aa+a++ a++k++g
  Traes_6BL_340C2A897.1 189 SCFHGVTRHRWSGKYEAHLWDsTCRvEGrrRKgKQVYLGSYDTEQKAARAYDVAALKFFG 248
                            789******************777786666336**********99***********9986 PP

2AP248.71.8e-15291342155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++ k+grW A+I       g ++ ++lg+f t+eeAa+a++ a+ +++g
  Traes_6BL_340C2A897.1 291 SIYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 342
                            57****************88832...2.5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-12189246IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-16189258IPR016177DNA-binding domain
SMARTSM003801.7E-25190262IPR001471AP2/ERF domain
PROSITE profilePS5103218.228190256IPR001471AP2/ERF domain
CDDcd000182.30E-18191258No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15191256IPR001471AP2/ERF domain
PRINTSPR003671.5E-5191202IPR001471AP2/ERF domain
CDDcd000181.37E-22291350No hitNo description
PfamPF008471.5E-9291342IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17291352IPR016177DNA-binding domain
SMARTSM003802.7E-27292356IPR001471AP2/ERF domain
PROSITE profilePS5103218.624292350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-19292351IPR001471AP2/ERF domain
PRINTSPR003671.5E-5332352IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMKSGEEVSQ GQQMNGFVEE KAAGESGYGR KIERSPSINL NSLPAIAPAT AEIGVLHGAV  60
ESEANDASTH KGDESSGTDQ KKVPKNEEVD EAEVQACADV KSHSVDPLNS ENHAGEKDAL  120
VTVPENEGCA DGGDNHKGVH VLSIVKKDES EEIVDSINPV TVAGYREEKG TAGSTSAITA  180
VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQVYLGSYD TEQKAARAYD  240
VAALKFFGLN TKLNFSISEY EKELADIQDM SPEECVTYLR RRSSCFSRGA SIYRGVTRRQ  300
KDGRWQARIG LIAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH  360
CIEGAGLKLL ATKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215222GRRRKGKQ
2279300RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529820.0AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153211.10.0AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_020174447.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A3B6PQE00.0A0A3B6PQE0_WHEAT; Uncharacterized protein
TrEMBLA0A446WKX70.0A0A446WKX7_TRITD; Uncharacterized protein
STRINGTraes_6BL_340C2A897.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-68AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]