PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_39EE7AF68.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 228aa    MW: 25081.2 Da    PI: 4.8783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_39EE7AF68.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.1e-11501072890
                            --..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                     B3  28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            ++  ++ ++t+ + + r ++vk+ y+++ ++++ ++GW++F ++n+L  g +vvF+ld+  + 
  Traes_6AS_39EE7AF68.3  50 NV--TGEKVTFVS-NQRAYTVKC-YKGRIKSTMYGRGWRKFYEDNNLGKGQMVVFHLDEP-SP 107
                            33..334566666.6799*****.888888899***********************9874.33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-939110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-1041106IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-1045104No hitNo description
PfamPF023621.1E-846105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAGAADAGVC GVCFNHCKYE SKGSGFSMVA WEEFKNAGVV PCNERAHFNN VTGEKVTFVS  60
NQRAYTVKCY KGRIKSTMYG RGWRKFYEDN NLGKGQMVVF HLDEPSPTAS ILWFQVGNGS  120
EDEQPMEEGD PIEDSDSGNE DGEASSDDGE GIVRTRGLLL NETEDAQLQG LLPLSDGFIG  180
FAFVHRLTRT DIRLGMMKIP KKVAAATLFE EQGVVGISVD GWRFKKIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184658.11e-57uncharacterized protein LOC109770365
TrEMBLA0A3B6NMN01e-166A0A3B6NMN0_WHEAT; Uncharacterized protein
TrEMBLA0A446VBL31e-166A0A446VBL3_TRITD; Uncharacterized protein
STRINGTraes_6AS_39EE7AF68.31e-170(Triticum aestivum)
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]