PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_1BF082306.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 342aa    MW: 36876.5 Da    PI: 8.5828
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_1BF082306.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17177210134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Traes_6AS_1BF082306.1 177 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 210
                            *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-13168211No hitNo description
SMARTSM004016.9E-19171223IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14175210IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268175207IPR000679Zinc finger, GATA-type
CDDcd002028.23E-15176208No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMDGDQD QGHFQAFHLP KGPPILFPFM IDNPVEHQGQ AYGDQHSRQQ  60
FFGESNQQFN DHMMMSGGSA DVFATCSPFG PTIQSIGSDM IQRSSYNSYD FEATHAGDGS  120
TSQWASAKPP VKMRIMRKAP TNDHQGGTAR KPRRRAQAHQ GDESQQLQHP MGVIRVCSDC  180
NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMAAAAATA ATNGGVASAS SGGVAEGATQ  240
ASDASQAVKA TKKEKRAVDL DRSLPFKKRC KMVDHPTVTS TKAVAVDATP KDQDHVVAED  300
GAMVERLSKA DPQAAFTHGF MRDEITDAAM LLMTLSCGLV RS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607600.0AK360760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158916.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-130CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A3B6NQI50.0A0A3B6NQI5_WHEAT; Uncharacterized protein
STRINGTraes_6AS_1BF082306.10.0(Triticum aestivum)
STRINGTraes_6AS_1BF0823061.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.18e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]