PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_E6DAE246D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 64aa    MW: 7048.96 Da    PI: 10.9777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_E6DAE246D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-162264248
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                           +ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +a
  Traes_6AL_E6DAE246D.1 22 KYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDA 64
                           8*****998.**********933...5*****************885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-212164IPR001471AP2/ERF domain
CDDcd000181.14E-172264No hitNo description
PfamPF008478.1E-102263IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-152264IPR016177DNA-binding domain
PROSITE profilePS5103218.5972264IPR001471AP2/ERF domain
SMARTSM003802.6E-112264IPR001471AP2/ERF domain
PRINTSPR003671.7E-92334IPR001471AP2/ERF domain
PRINTSPR003671.7E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MSTLSPVSGA ASPEAEGGGG RKYKGVRRRK WGKWVSEIRL PNSRERIWLG SYDAPEKAAR  60
AFDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042578e-40AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149588e-40AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126108e-40CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182589.18e-36ethylene-responsive transcription factor RAP2-1-like
SwissprotQ84QC22e-23ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A3B6NV622e-36A0A3B6NV62_WHEAT; Uncharacterized protein
TrEMBLA0A446VQV62e-36A0A446VQV6_TRITD; Uncharacterized protein
STRINGTraes_6AL_E6DAE246D.13e-38(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-14ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]