PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_842E10085.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 178aa    MW: 19544.6 Da    PI: 8.4983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_842E10085.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.7e-083312255
                           HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            L++l+P++      K +Ka++L  A+eY+k+Lq
  Traes_6AL_842E10085.1  3 ALQSLVPNS-----SKTDKASMLDDAIEYLKHLQ 31
                           699999997.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.297130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-12144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-8135No hitNo description
SuperFamilySSF474591.57E-11151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKALQSLVPN SSKTDKASML DDAIEYLKHL QLQVQMLSMR NGMYRPSVNL PGAAGHLPTS  60
QMCAALNQNS VDASSNPPAA MLPMNHFLGA MSGARPSFDH PNQDRPRHEP LVLSSVPCTT  120
TREPPFLLGP SQESPLRSLQ LTLPAEVTVL LSAEHKPPLL CKCRKANCQY FPYTVHLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606561e-173AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235938.13e-49PREDICTED: transcription factor SPATULA-like
TrEMBLW5G8B01e-128W5G8B0_WHEAT; Uncharacterized protein
STRINGMLOC_65463.14e-86(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-20bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]