PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_CB3830B22.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 603aa    MW: 67900.8 Da    PI: 5.1562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_CB3830B22.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068571590322
                            ETTTTEEESSHHHHHHHHHH CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                            C+ Cg +F ++s L +H+  
  Traes_5DS_CB3830B22.2 571 CETCGDTFESRSKLFSHLEE 590
                            *****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.2E-22579IPR001623DnaJ domain
SuperFamilySSF465654.06E-225110IPR001623DnaJ domain
SMARTSM002716.9E-20869IPR001623DnaJ domain
CDDcd062578.49E-17966IPR001623DnaJ domain
PROSITE profilePS5007617.786977IPR001623DnaJ domain
PfamPF002264.7E-191074IPR001623DnaJ domain
PRINTSPR006258.2E-121129IPR001623DnaJ domain
PRINTSPR006258.2E-122944IPR001623DnaJ domain
PRINTSPR006258.2E-124969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.1E-12298343No hitNo description
SMARTSM004514.3E-6298332IPR003604Zinc finger, U1-type
SMARTSM003553.4301325IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-10301326IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280303325IPR007087Zinc finger, C2H2
SMARTSM003559.1569593IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307569598IPR007087Zinc finger, C2H2
PROSITE patternPS000280571593IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MASAAPKRCY YEVLGLSRDC SPTDIKLAFR RLALTLHPDK QAPGSDVAAA TAAFQELQHA  60
HSVLSDPQER AYYDSHRSQI LFADPVSSRS GTASASPVPD LFSFFSTSAF SGFSDSGRGF  120
YKVYGDVFDK VYAQEVAYAR RMGIPTDSIP TPPVIGNLDS PYTQVTAFYS YWLGFGSVMD  180
FGWAAEWDAS RGENRRVRRL MEEDNKKAMR KARREYNDAV RGLAAFCKKR DKRVVDMALR  240
KKAEEEKKKK EEMERKKAEE KKKKERAMAY QEPEWARVDD IELAFEEEDD EETREKAKEE  300
LYCVACNKKF KSEKQWKNHE QSRKHKDKVA DLRMAFKEEE AALKEAEEEA GGEWEEVDVG  360
FDFKPANESE ESDWSDAAEE LAEELDEGLE VADQDNGNKD FNNGEQEVGS YDETSVLEAM  420
LSSCKNKKSG YVVPQEEAPS VLTEDDNSED RNSEVKSVKK KGRRRRASKK GQDEGSYADS  480
GHGMKNDVPN EESVHDNDEN DADDKAEGPP SSNDDGTSAS VGGQQNEKTD NPKKNKKNKK  540
GAEKKTTVSA DVKITSKGKK QKEVSRARND CETCGDTFES RSKLFSHLEE TGHAVIKARQ  600
KKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247263KKKEEMERKKAEEKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2526480.0AK252648.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165o10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193900.10.0DNAJ protein JJJ1 homolog
TrEMBLW5G4380.0W5G438_WHEAT; Uncharacterized protein
STRINGMLOC_66679.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-110DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]