![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5DS_94CF29476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 269aa MW: 28816.9 Da PI: 9.2522 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.5 | 9.7e-17 | 45 | 83 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Traes_5DS_94CF29476.1 45 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 83 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 23.767 | 1 | 85 | IPR005172 | CRC domain |
SMART | SM01114 | 4.4E-17 | 45 | 86 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.1E-12 | 47 | 83 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MEIVLSTREQ IESRNPLAFA PKVIRTSEPG QELGEYSNKT PASARHKRGC NCKKSSCLKK 60 YCECYQGGVG CSISCRCEGC KNAFGRREGL GPLSIEEAKQ GNEENSACVK EEKKEDDNNQ 120 LVICPAANPV PAENVLTTPS AMDVRPLASR PPSSSKRPRS TTKVLGHPSR LCNSQAPLKT 180 DTLLSPFENY AEIMFGVGTS DSLKGGLSPQ TSVKVVSPNK KRVSPPRIGT GLSPICKSGR 240 KLILKSIPSF PSLGGDVNNA DTKTTLPAP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-12 | 14 | 82 | 63 | 120 | Protein lin-54 homolog |
5fd3_B | 8e-12 | 14 | 82 | 63 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK354434 | 0.0 | AK354434.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007E24. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189110.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
Swissprot | F4JIF5 | 2e-54 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A3B6ML60 | 0.0 | A0A3B6ML60_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453JQU8 | 0.0 | A0A453JQU8_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453JQV7 | 0.0 | A0A453JQV7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_94CF29476.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14770.1 | 4e-53 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|