PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_94CF29476.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 269aa    MW: 28816.9 Da    PI: 9.2522
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_94CF29476.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.59.7e-174583139
                    TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                           ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Traes_5DS_94CF29476.1 45 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 83
                           589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163423.767185IPR005172CRC domain
SMARTSM011144.4E-174586IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.1E-124783IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEIVLSTREQ IESRNPLAFA PKVIRTSEPG QELGEYSNKT PASARHKRGC NCKKSSCLKK  60
YCECYQGGVG CSISCRCEGC KNAFGRREGL GPLSIEEAKQ GNEENSACVK EEKKEDDNNQ  120
LVICPAANPV PAENVLTTPS AMDVRPLASR PPSSSKRPRS TTKVLGHPSR LCNSQAPLKT  180
DTLLSPFENY AEIMFGVGTS DSLKGGLSPQ TSVKVVSPNK KRVSPPRIGT GLSPICKSGR  240
KLILKSIPSF PSLGGDVNNA DTKTTLPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-12148263120Protein lin-54 homolog
5fd3_B8e-12148263120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544340.0AK354434.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189110.10.0protein tesmin/TSO1-like CXC 2
SwissprotF4JIF52e-54TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A3B6ML600.0A0A3B6ML60_WHEAT; Uncharacterized protein
TrEMBLA0A453JQU80.0A0A453JQU8_AEGTS; Uncharacterized protein
TrEMBLA0A453JQV70.0A0A453JQV7_AEGTS; Uncharacterized protein
STRINGTraes_5DS_94CF29476.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-53TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]