PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_6E33F5034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 298aa    MW: 32535.2 Da    PI: 5.1408
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_6E33F5034.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-15106160360
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                            + kr +r+ +NRe+ArrsR+RK+a +   e  v +L aeN +L    ++l+++ +k k
  Traes_5DS_6E33F5034.1 106 SAKRVKRMLSNRESARRSRKRKQAHQNDIESQVTQLRAENASLL---KRLTDMTQKYK 160
                            78**************************************9998...55555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-12103160No hitNo description
SMARTSM003381.6E-15104168IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.139106161IPR004827Basic-leucine zipper domain
PfamPF001701.4E-13106160IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.0E-11108159No hitNo description
CDDcd147021.14E-17109159No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
PfamPF124981.6E-21175278IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MECSGDEVVE LNCARAGGDP GEYAAVLKRK LQLYCAAVAK TMEGKPQESS LNCLSSQASD  60
TSPLVSQASF DCDGTVVQGK PANSCTSKEQ SDDDDGDLEE NTDPASAKRV KRMLSNRESA  120
RRSRKRKQAH QNDIESQVTQ LRAENASLLK RLTDMTQKYK EASLGNRNLT VDIETMRRKV  180
NIAEEAVRRV TGASLMFSTT SNNVPLASCV SVAASADAVP SEENMSHFLQ GLLEDDLIKH  240
DVSEVATPLP NGEEMASRPA SLRRVASLEN LQKRIHRDSV HSEDMSIFPD HEVPANAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRSRKRK
2120127RRSRKRKQ
3122127SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2515890.0AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183207.10.0light-inducible protein CPRF2-like isoform X1
SwissprotQ990902e-39CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A3B6MJY50.0A0A3B6MJY5_WHEAT; Uncharacterized protein
STRINGTraes_5DS_6E33F5034.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-32bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]