PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_1BDB9837E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 416aa    MW: 44901.6 Da    PI: 4.1666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_1BDB9837E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1954103255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Traes_5DS_1BDB9837E.1  54 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 103
                            789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.24E-3053110No hitNo description
PfamPF008471.0E-1354103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2754110IPR001471AP2/ERF domain
SMARTSM003804.6E-3554117IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1954111IPR016177DNA-binding domain
PROSITE profilePS5103219.55954111IPR001471AP2/ERF domain
PRINTSPR003676.2E-85566IPR001471AP2/ERF domain
PRINTSPR003676.2E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVPSMARKRK ASDDVSDADI DVGIPLSLAS TDAWTTSTVA AATAARQQQR GRKRFVGVRQ  60
RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL LRGANTRTNF WPRPSPPAAL  120
QPPPPPAMLS MQAPALPSKV SNLLLLRLKA RNQQLLLNDA TAPQEAALLQ QQMQKQMSSS  180
TSSCQESYIH GRDDEYCFQV DDFLSEECNN SPEMEEEEEE EVEEEEEVEE EEELDFQFMD  240
KPAAAGDEDA GLCSPFEMVA AELGGSAPVE ANDVDGEPAT AVQEAMRRMD YERKVSASLY  300
ALSGVSECLR MRLGGGASAA RDQLSGLREA CRKKQRLAVQ QPASEQSSEP AAAAADHGTE  360
EDGKAYVQEE CSGSSSGSSS LTEAGSSSSP EAANGSSDGD VLLWSSLDLA PICYMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171738.10.0uncharacterized protein LOC109757323
TrEMBLA0A3B6MLP40.0A0A3B6MLP4_WHEAT; Uncharacterized protein
STRINGTraes_5DS_1BDB9837E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]