PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_E88449625.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 279aa    MW: 30893.4 Da    PI: 7.1774
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_E88449625.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-132575155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
                           s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Traes_5DL_E88449625.2 25 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 75
                           89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-92575IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-172584IPR016177DNA-binding domain
CDDcd000183.21E-262585No hitNo description
Gene3DG3DSA:3.30.730.101.5E-162684IPR001471AP2/ERF domain
PROSITE profilePS5103216.2522683IPR001471AP2/ERF domain
SMARTSM003806.2E-332689IPR001471AP2/ERF domain
PRINTSPR003676.1E-72738IPR001471AP2/ERF domain
PRINTSPR003676.1E-76585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLFDSEV  60
EAARAYDRAA IRFNGREAVT NFESSSYNGD APPDAENEAI VDADALDLDL RMSQPTAHDP  120
KRDNIIAGLQ LTFDSPESST TMLSSQPMSS SSSQWPVHQH GTAVAPQQHQ RLYPSACHGF  180
YPNVQVQVQV QERPMEPRPP EPPSCFPSWG WQAQAMPPGS SHSPLLYAAA SSGFSTAAGA  240
HPAPPPPPSY PDHHRFYFPR PGNSCCELIG ERHTLPGHV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6970020.0AB697002.1 Triticum aestivum q mRNA for transcription factor WAP2D, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154435.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8B8J21e-101AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A453M9240.0A0A453M924_AEGTS; Uncharacterized protein
STRINGTraes_5DL_E88449625.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-49related to AP2.7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]