PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_CACDF70D6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 266aa    MW: 29906.3 Da    PI: 7.7456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_CACDF70D6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.38.6e-3036141198
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k ltpsdv+k++rlv+pk++ae++      +++ e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F
  Traes_5DL_CACDF70D6.1  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHF 123
                            99****************************87445557778999******************************************** PP

                            EE-SS..SEE..EEEEE- CS
                     B3  83 kldgr..sefelvvkvfr 98 
                            ++++   ++ +l+++ +r
  Traes_5DL_CACDF70D6.1 124 ERVRGlgTGDRLFIGCRR 141
                            *88655455556666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3930147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2833129IPR015300DNA-binding pseudobarrel domain
CDDcd100176.56E-2834128No hitNo description
SMARTSM010193.0E-2336142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.36636142IPR003340B3 DNA binding domain
PfamPF023623.9E-2736142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDI  120
VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNA GEHQPWSPMC YSTSGSYPSS  180
PANSYAYRRS VEQDHSDMLH AGESQREADA KSSTASAPPS RRLRLFGVNL DCGPEPEAEA  240
ITPMYGYTHQ SPYAAVATVP SYWGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-50311423113B3 domain-containing transcription factor NGA1
5os9_B5e-50311423113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185469.10.0B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-132Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A3B6MP120.0A0A3B6MP12_WHEAT; Uncharacterized protein
TrEMBLA0A453K9810.0A0A453K981_AEGTS; Uncharacterized protein
STRINGTraes_5DL_CACDF70D6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.26e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]