PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_B25AF1570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 290aa    MW: 31192.8 Da    PI: 7.2574
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_B25AF1570.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.3e-1363112355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV++++++grW A+I  +s    +k  +lg+f  + +Aa+a++ a+ k++g
  Traes_5DL_B25AF1570.1  63 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 112
                            9***************999754...5**********99************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.15126IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-5227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-5227IPR001471AP2/ERF domain
CDDcd000182.89E-1361122No hitNo description
SuperFamilySSF541711.11E-1661121IPR016177DNA-binding domain
PROSITE profilePS5103218.14962120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1762120IPR001471AP2/ERF domain
SMARTSM003809.2E-2962126IPR001471AP2/ERF domain
PfamPF008474.5E-863112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEEKAARAYD LAALKYWGAS THINFPVEDY QEELEVMKNM TRQEYVAHLR RKSSGFSRGA  60
SMYRGVTRHH QQGRWQARIG RVSGNKDLYL GTFSAEADAA EAYDVAAIKF RGLNAVTNFD  120
INRYDVDKIM ESSTLLPGDQ VRRRKDGPDE SAAVVASAAA ALVQAGSAAD YWRQPAAVTT  180
DDQSRHHLDL LSSESFSLLR GVVSVDGDAA GAQQGQGNRM SGASSLATSL SNSREQSPDQ  240
GGGLAMLFAR PAAPKLASSL PMGTWVSSPA PARPGVSVAH MPVFAAWADA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753180.0AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156625.10.0AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z021e-123CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A453LWU80.0A0A453LWU8_AEGTS; Uncharacterized protein
STRINGTraes_5DL_B25AF1570.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-73AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]