PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_6A12758FC.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 309aa    MW: 32168.1 Da    PI: 7.5567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_6A12758FC.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.2e-05167212454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            + n+r r R +r+ +++  L++l+ +      +K + a++L +A  YI+ L
  Traes_5DL_6A12758FC.2 167 STNKRPRARKERLGERILALQQLVSPF-----GKTDTASVLHEALGYIRFL 212
                            679***********************8.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.411163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-12167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-4169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-5169217No hitNo description
Gene3DG3DSA:4.10.280.105.0E-7169221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVKEEEVMAE AGGRGYLDML GLGEEAMADY FLCLSPSSSA AVSTTTTTSA STHTVASPTC  60
ASYLAPLAAP CHHVLSFGGR AEQQYYGGGD IFGFQYYYHG AGGPAVPVAA PQKSSPTTDC  120
SSSISTMSSS PTATAASGIS TSKPQPSKKR GSRGSSDQRK AAPPAASTNK RPRARKERLG  180
ERILALQQLV SPFGKTDTAS VLHEALGYIR FLHDQVQVLS SPYMQRLPPS SAPPAPLPAV  240
VEPGDLRSRG LCLVPVSCTD HVAGGSGNGA DVWSSVPAMG MPATAEEEYA VAAGMLRGDR  300
DHHPSRQLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751260.0AK375126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690492.11e-102PREDICTED: transcription factor bHLH110-like
RefseqXP_015690493.11e-102PREDICTED: transcription factor bHLH110-like
TrEMBLW5FUB70.0W5FUB7_WHEAT; Uncharacterized protein
STRINGMLOC_63969.31e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.19e-36bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]