PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_386343EA1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 252aa    MW: 28031.4 Da    PI: 9.8331
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_386343EA1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.98.5e-30297497
                 DUF573  4 qrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91
                           +rlws  De+++L+Gl +++ak g+   +++di ++++ ++ ++s++vs++ql++K+rrLK+K++   ++ak+g+e++++++hd++i+e+
  Traes_5DL_386343EA1.1  2 SRLWSHGDELLILRGLATYRAKSGVlpGSTNDIGKLHSHIRAQLSVRVSTTQLSDKVRRLKQKYQLLATRAKNGREQELHTPHDRSIYEH 91
                           69***********************877888*********************************************************** PP

                 DUF573 92 skkiWg 97
                           +kk+Wg
  Traes_5DL_386343EA1.1 92 AKKVWG 97
                           *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-26297IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
PSRLWSHGDE LLILRGLATY RAKSGVLPGS TNDIGKLHSH IRAQLSVRVS TTQLSDKVRR  60
LKQKYQLLAT RAKNGREQEL HTPHDRSIYE HAKKVWGLVG SGGGDGGGSG YENYGGGDSD  120
ELQYSGDSDD DMESQRDDRY HIKNRKVRPI TAANGNGIGL GAVNANGRGK SGLEKGKDAY  180
PYLWETVEEL SKEHPSGAAF KKAFEVLEGS KARAIEEKLR RFRLTEIRQQ LRRMDLMKET  240
VRMVLDALES AD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705900.0AK370590.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112N22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578208.11e-148PREDICTED: uncharacterized protein LOC100839453
TrEMBLF2E3670.0F2E367_HORVD; Predicted protein
TrEMBLM0WVU50.0M0WVU5_HORVD; Uncharacterized protein
TrEMBLW5FS830.0W5FS83_WHEAT; Uncharacterized protein
STRINGMLOC_55076.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.12e-15DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]