PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_E491AA5F3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 628aa    MW: 66037 Da    PI: 7.1769
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_E491AA5F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-15297356155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Traes_5BL_E491AA5F3.1 297 SKYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 356
                            89*******************655454478446*************************98 PP

2AP2409.9e-13401450355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV++++++grW A+I  +s    +k  +lg+f  + +Aa+a++ a+ k++g
  Traes_5BL_E491AA5F3.1 401 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 450
                            9***************999754...5**********99************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-16297365IPR016177DNA-binding domain
CDDcd000187.68E-20297365No hitNo description
PfamPF008471.1E-12297356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-16298365IPR001471AP2/ERF domain
PROSITE profilePS5103219.23298364IPR001471AP2/ERF domain
SMARTSM003801.5E-28298370IPR001471AP2/ERF domain
PRINTSPR003674.4E-6299310IPR001471AP2/ERF domain
CDDcd000189.94E-13399460No hitNo description
SuperFamilySSF541713.66E-16399459IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-17400458IPR001471AP2/ERF domain
PROSITE profilePS5103218.149400458IPR001471AP2/ERF domain
SMARTSM003809.2E-29400464IPR001471AP2/ERF domain
PfamPF008471.4E-7401450IPR001471AP2/ERF domain
PRINTSPR003674.4E-6440460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MTNGGHSMSG ASIAGGAGGW LGFSLSPHVA MDAAAGSGIV DMAGHHHAHH GGVYYHPDAV  60
ASSPMSFYFG GGDNVSAASG GYYSGISALP LRSDGSLCLA DALRRSEQKH HGAEVSAPPK  120
LEDFLGASPA MALTLDNSGY YYGGQGHGHG DAGEGQHQLP SAMMPGSGGH HMYYDAHAAL  180
LDEQAAATSA AMEAAGWMAR AGDVYEVDGG NGEDGGGAIV TAGHDNPGGY VHPLTLSMSS  240
GSQSSCVTMQ QSAAQAHAYV GQATAASKKR GAGAGAGQNK QPVVHRKCID TFGQRTSKYR  300
GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGASTH  360
INFPVEDYQE ELEVMKNMTR QEYVAHLRRK SSGFSRGASM YRGVTRHHQQ GRWQARIGRV  420
SGNKDLYLGT FSAEADAAEA YDVAAIKFRG LNAVTNFDIN RYDVDKIMES STLLPGDQVR  480
RRKDGPDDSA AVVASAAAAL VQAGSATDYW RQPAAVTTDE HSRHHLGLLS SESFSLLRGV  540
VSVDGDAAGA QQGQGNRMSG ASSLATSLSN SREQSPDQGG GLAMLFARPA APKLASSLPM  600
GTWVSSPAPA RPGVSVAHMP MFAAWADA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753180.0AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156625.10.0AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z021e-158CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3B6LSJ20.0A0A3B6LSJ2_WHEAT; Uncharacterized protein
TrEMBLA0A446UNN00.0A0A446UNN0_TRITD; Uncharacterized protein
STRINGTraes_5BL_E491AA5F3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-111AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]