PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_DDC2491F7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 235aa    MW: 25266.5 Da    PI: 6.1499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_DDC2491F7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08161201954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Traes_5BL_DDC2491F7.1 161 ARLRRERISERIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 201
                            699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-13151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5162201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-6174206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDFDLLMSSS PEAQLALMNT MLQLEQALND QSMMMGETSP PISPVQTPSQ SLSPPPHVST  60
TCATADASYF YHQDLQTQAA AAGYAGTGGV HQEYVVSPGA AVFDGAGGTP QGYSSPSSSD  120
AMREMIFHIE ALQPVEVDPE AVRPPKRRNV RTSKDPQSVA ARLRRERISE RIRVLQRLVP  180
GGTKMDTASM LDEAIHYVKF LKSQVQSLEL AAAATGAAAH RAAAFAYPAL QHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RPPKRR
2161166RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699600.0AK369960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2102B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578226.13e-75PREDICTED: uncharacterized protein LOC100844721
SwissprotQ9FHA72e-42HEC1_ARATH; Transcription factor HEC1
SwissprotQ9SND41e-42HEC2_ARATH; Transcription factor HEC2
TrEMBLW5FJ291e-173W5FJ29_WHEAT; Uncharacterized protein
STRINGMLOC_16429.11e-116(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-41bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]