PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_D45BBFEBC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 273aa MW: 29429 Da PI: 6.7392

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_D45BBFEBC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	98	143	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f Lr +P+ +++Ka+ L Av YI +L Traes_5BL_D45BBFEBC.1 98 SHVEAERQRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYITDL 143 89**********************6.....4*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-16	93	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.072	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.35E-13	97	148	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-15	98	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	98	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	100	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDELLSPYAP FFPSSPPSQF STAEGHHHHV FELASCEVPE QWLVGDTVVP AKSEHGDYVW 60 PAGSSSLSPD LPGDSLQPST TKRRGRKPGP RPDGPAVSHV EAERQRRDKL NRRFCDLRAA 120 VPNVSRMDKA SLLADAVAYI TDLRSRVARL EVEGRQAAAA RCEAWNASAS SSWGGHAGAS 180 LHHVAADDVV EVRMVGKDAA AVRMMSPGQA PHAPARLMSA LRSLELQVQH ACVNRVEGVT 240 VQDVVVDVPA ALQDDDGDGA LRSALLQRLR YTA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	2e-53	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	AP014965	2e-53	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	AP007254	2e-53	AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBank	AP006525	2e-53	AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611415.1	1e-87	PREDICTED: transcription factor MYC2
TrEMBL	W5FIK2	0.0	W5FIK2_WHEAT; Uncharacterized protein
STRING	BGIOSGA029426-PA	3e-87	(Oryza sativa Indica Group)
STRING	LOC_Os09g34330.1	3e-87	(Oryza sativa Japonica Group)
STRING	ORGLA09G0131400.1	3e-87	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP893	33	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	5e-26	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]