PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_D45BBFEBC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 273aa    MW: 29429 Da    PI: 6.7392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_D45BBFEBC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-1398143454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  Traes_5BL_D45BBFEBC.1  98 SHVEAERQRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYITDL 143
                            89************************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1693156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.07294143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-1397148No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1598157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1098143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDELLSPYAP FFPSSPPSQF STAEGHHHHV FELASCEVPE QWLVGDTVVP AKSEHGDYVW  60
PAGSSSLSPD LPGDSLQPST TKRRGRKPGP RPDGPAVSHV EAERQRRDKL NRRFCDLRAA  120
VPNVSRMDKA SLLADAVAYI TDLRSRVARL EVEGRQAAAA RCEAWNASAS SSWGGHAGAS  180
LHHVAADDVV EVRMVGKDAA AVRMMSPGQA PHAPARLMSA LRSLELQVQH ACVNRVEGVT  240
VQDVVVDVPA ALQDDDGDGA LRSALLQRLR YTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126172e-53CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankAP0149652e-53AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0072542e-53AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0065252e-53AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611415.11e-87PREDICTED: transcription factor MYC2
TrEMBLW5FIK20.0W5FIK2_WHEAT; Uncharacterized protein
STRINGBGIOSGA029426-PA3e-87(Oryza sativa Indica Group)
STRINGLOC_Os09g34330.13e-87(Oryza sativa Japonica Group)
STRINGORGLA09G0131400.13e-87(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-26bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]