PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B6C71B544.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 383aa    MW: 42131.8 Da    PI: 11.5948
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B6C71B544.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1655114155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s ++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Traes_5BL_B6C71B544.1  55 SVHRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 114
                            689******************888866656446*************************98 PP

2AP252.11.6e-16157208155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Traes_5BL_B6C71B544.1 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 208
                            89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-1755124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-1656123IPR001471AP2/ERF domain
PfamPF008476.5E-1356114IPR001471AP2/ERF domain
PROSITE profilePS5103220.23156122IPR001471AP2/ERF domain
SMARTSM003806.9E-2656128IPR001471AP2/ERF domain
PRINTSPR003673.2E-55768IPR001471AP2/ERF domain
CDDcd000183.46E-20157218No hitNo description
PfamPF008471.6E-12157208IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18157218IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-18158217IPR001471AP2/ERF domain
PROSITE profilePS5103218.36158216IPR001471AP2/ERF domain
SMARTSM003801.7E-25158222IPR001471AP2/ERF domain
PRINTSPR003673.2E-5198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAKPRKNSAA AAAAAAANSN AIASAAADAG ADVRAKPKKR TRKSVPRESP SQRSSVHRGV  60
TRHRWTGRFE AHLWDKNSWN ESQNKKGKQV YLGAYDEEEA AARAYDLAAL KYWGPDTILN  120
FPLSIYEEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG  180
NKYLYLGTYA TQEEAAMAYD MAAIEYRGLN AVTNFDLSRY IKWLRPGAAD VXXXXXXRPE  240
RAPDAGQPRG AGAPRDRPRR HGVPARPPPA GHGGRHDRGG GGGRGGGAVP AAAGKGGHAR  300
PHPHHVRAQP AAAVAQVQGD DRADVGRREQ HHHVLLVHVH AAAAAGHQGR RRLAAVQLPG  360
GHPDLLRQRR RRGLHRRRRP LLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272280GGRHDRGGG
2349371RRRLAAVQLPGGHPDLLRQRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-136PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLW5FGY70.0W5FGY7_WHEAT; Uncharacterized protein
STRINGOB09G17420.11e-135(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.17e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]