PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_92902F993.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 835aa    MW: 93538.6 Da    PI: 6.4814
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_92902F993.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11673e-5261223118
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r frkDG++w+kkk+g tv+E+he+L  g+++vl+cyYah+e
  Traes_5BL_92902F993.1   6 KEaQTRWLRPTEICEILKNYRNFHIAPEPPNMPASGSLFLFDRKVLRLFRKDGHNWRKKKNGTTVKEAHERLTSGSIDVLHCYYAHGE 93 
                            5559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                            +n +fqrr+yw+Lee++ +ivlvhylevk
  Traes_5BL_92902F993.1  94 DNINFQRRSYWMLEEDYMHIVLVHYLEVK 122
                            **************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.8591127IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-694122IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-467121IPR005559CG-1 DNA-binding domain
CDDcd001027.03E-6258345No hitNo description
Gene3DG3DSA:2.60.40.101.6E-7258345IPR013783Immunoglobulin-like fold
PfamPF018331.4E-7258343IPR002909IPT domain
SuperFamilySSF812962.68E-18259344IPR014756Immunoglobulin E-set
SuperFamilySSF484038.24E-18453558IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-18453559IPR020683Ankyrin repeat-containing domain
CDDcd002049.26E-15453554No hitNo description
PROSITE profilePS5029718.643453556IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.71462494IPR002110Ankyrin repeat
SMARTSM002480.013495524IPR002110Ankyrin repeat
PROSITE profilePS500888.736495527IPR002110Ankyrin repeat
SMARTSM002481500534563IPR002110Ankyrin repeat
SuperFamilySSF525401.14E-6665718IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24668690IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206669698IPR000048IQ motif, EF-hand binding site
PfamPF006120.025670689IPR000048IQ motif, EF-hand binding site
SMARTSM000150.55691713IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151692716IPR000048IQ motif, EF-hand binding site
PfamPF006120.0059694713IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MEQILKEAQT RWLRPTEICE ILKNYRNFHI APEPPNMPAS GSLFLFDRKV LRLFRKDGHN  60
WRKKKNGTTV KEAHERLTSG SIDVLHCYYA HGEDNINFQR RSYWMLEEDY MHIVLVHYLE  120
VKLPSGNDGT STECLQLPSA IDGTTTEFQL PSATDSTFAT VDSFEQNNKL LGEAINFPVL  180
KTQSSNLSDM LKDSFKRSDS FARWMSKELA EVDDSQVKSS SGLYRNSEDA DNIIGASRHD  240
QLDWFTLDPM VAQDQLFSIT EFFPSWTYAG SKTRVLVTGS FLTSDKVIKL KWSCMFGEVE  300
VPADILAGGT LRCYSPPHKP GRVPFYVTCS NKLACSEVRE FEYRPSDSQY MDAPSPHGAT  360
NKIYLQARLD ELLSLGQDEQ DKFQAALSGP KKELIDLNKK ITSLMTDNDP WSELLKFADD  420
NQLAPDDRQD QFVESSIKEK LHIWLLHKAG GGGKDPSVLD EEGQGVLHLA AALGYDWVIR  480
PTITAGVSIN FRDVHGWTAL HWAAFCGRER TVVALIALGA APGALTDPRP DFPSGRTPAD  540
LASFNGHKGI SGFLAEFSLT SHLQTLNLKE AMGSNASEIS GLPGIGDVTG RIASPSAGQG  600
LQAGLMGDSL GAVRNAAQAA ARIFQVFRVQ SFQRKQAVQY EDDNGVISYE RAMSLLSYKP  660
SKPGQFDPMH AAAARIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVSK HYRKIIWSIG  720
IMENVILRWR QQGAGLRGFR STEGATDSST SSSSVDVIPV KPAEDDYNFL QDGRKQAEER  780
LQRALARVKS MVRYPEARDQ DQRILTVVTK MQESQLVEET LLEESTEMDE GFFDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652100.0AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558617.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLW5FEZ50.0W5FEZ5_WHEAT; Uncharacterized protein
STRINGBRADI1G71810.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-180Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]