PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_71717F042.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 424aa    MW: 44432.4 Da    PI: 6.8005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_71717F042.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09245293355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Traes_5BL_71717F042.1 245 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 293
                            58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17240310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-11240297No hitNo description
PROSITE profilePS5088815.65242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16243309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-7245293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGFSAHQ HQQHPHMMDS FGSGMWSAAS  60
QHGAGFLAPV PGFLPPPGLG GHFPVDSGFI ERAARSSCFV GPGAGGGMMG AGAFGGAGDQ  120
QMGSAFGEGY LDHRRKEGGD KAEPELAGSG GVPSSEAAGG DCSSKGSDSK KRRRPSEVMG  180
GDQVQSSNVA ADSANESAQS KDKGEESSPA TGTTTGGKSK GKGAKESSEK EDYIHVRARR  240
GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS  300
MKLATVNPRL DLNIEGLLSK DLLRFPGVSS SSMGFSPEMM HPQLQLSQPG LMQGGAAAMA  360
NSDVFRRIMQ AQLGAKDGSH SQMAHALNGP FSDHVAQMAY PSMGSSHSHS QDLSIRPSQD  420
AYQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627780.0AK362778.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578282.10.0PREDICTED: transcription factor bHLH49
RefseqXP_010238258.10.0PREDICTED: transcription factor bHLH49
SwissprotQ9CAA93e-67BH049_ARATH; Transcription factor bHLH49
TrEMBLW5FD650.0W5FD65_WHEAT; Uncharacterized protein
STRINGBRADI4G32934.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-55bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]