PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_553BE31FE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 209aa    MW: 22621.5 Da    PI: 8.7901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_553BE31FE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-133278354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           r+h+e+Er+RR+riN+ +++Lr+llP+a       ++Ka+ L ++v+++++L
  Traes_5BL_553BE31FE.1 32 RSHSEAERKRRQRINTHLATLRSLLPSA-----SQMDKAALLGEVVRHVREL 78
                           78*************************9.....68**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9172978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-133280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-113278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-113279No hitNo description
Gene3DG3DSA:4.10.280.106.5E-143280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-113584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.2E-5119169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVLPTRGGEP EEAEVEMDDQ RSPPVRGART SRSHSEAERK RRQRINTHLA TLRSLLPSAS  60
QMDKAALLGE VVRHVRELRG DADGGAVAGV AVPGESDEVG VEEERWDARE SAKRVRAWVC  120
CADRPGLMSE LGRAVRSVSA RAVRAEIATV GGRTRSVLEL EAGQATDASR PALHAALRAV  180
LLSREDQLLA VEGYKRQRFS ALISQGLGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279686e-99KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170738.11e-139transcription factor AIG1-like
TrEMBLA0A3B6LNI21e-143A0A3B6LNI2_WHEAT; Uncharacterized protein
STRINGTraes_5BL_553BE31FE.11e-143(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.16e-24basic helix-loop-helix 32
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]