PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_2DDBAA0C2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 404aa    MW: 41949.4 Da    PI: 9.8036
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_2DDBAA0C2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.3e-35691792112
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssss 69 
                             g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk++eWL+++a +ai+el+++                    +   
  Traes_5BL_2DDBAA0C2.1  69 SGGKDRHSKVYTSKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAVEWLINAASAAIDELPSLdpaafanmpadhqaapragkQ--- 153
                            689*************************************************************655555333332222222220... PP

                    TCP  70 aseceaesssssasnsssgkaaksaakskksqksaasalnlak 112
                                            +++ + + + +s+ s++s+ s l+l++
  Traes_5BL_2DDBAA0C2.1 154 ----------------QQP-QGSRSLCSSTSETSKGSELSLSR 179
                            ................222.11111122233333332333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3470192IPR005333Transcription factor, TCP
PROSITE profilePS5136933.38171129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MESADAAGGA PGGGAPPGRG SSAKRMRGVI GSGGGDGMEL VPWGSPPQPG QQPPQLQGSA  60
SRICRVRASG GKDRHSKVYT SKGIRDRRVR LSVPTAIQFY DLQDRLGFDQ PSKAVEWLIN  120
AASAAIDELP SLDPAAFANM PADHQAAPRA GKQQQPQGSR SLCSSTSETS KGSELSLSRS  180
DGRVGGGSSL DKEVTVASNP SAQAGSFTEL LTGAGAASAI ATAAPRRQSW QQQQQQPVSA  240
VTADRVGIAH PGKGSGAQVV PTYPGFRFGN APPFGMQPAQ PFNFGPSAQN QMTQFSLVQG  300
GLAAAPAPAQ AGDYSLDFSM NSGYMGATRG ALQSNSPHFS SHQQQQQQQR QLQDLDDGPS  360
PPFLYANAAA TAPHLASENH LTATAAMQLW NGLQHAGMKE KSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2476130155Putative transcription factor PCF6
5zkt_B2e-2476130155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582890.0AK358289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147324.10.0transcription factor PCF6-like
SwissprotQ10CE83e-99PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A3B6LT390.0A0A3B6LT39_WHEAT; Uncharacterized protein
STRINGTraes_5BL_2DDBAA0C2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-35TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]