PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_054434680.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 449aa    MW: 47975.4 Da    PI: 6.6408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_054434680.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.5e-16273319455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Traes_5BL_054434680.2 273 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 319
                            6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-21267336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-17272323No hitNo description
Gene3DG3DSA:4.10.280.108.5E-22273327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-14273319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-17275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPPVVQED  60
EAGLWFPFAL ADSLDKDIFQ DLFCEEPPGA AGVDGSSRQQ SMSLADCGDN AGGFQSDLVQ  120
ARAGKAAMEE GASSTLSAMG ASFCGSNQVQ VQGAVSDHGR AGHATAYGDG GAGSALPSAV  180
GSVNANARGR GHEATVASSS GRSNYSFGVT ATTTTTTGTE PTSTSNRSSK SKRGLDTEDS  240
ESPSEDAESE SLVLERKPPQ KLTTARRSRA AEVHNLSERR RRDRINEKMR ALQELIPHCN  300
KTDKASMLDE AIEYLKTLQM QVQMMWMGSG MAPPAVMFPG MQMHQYLPQM GPSMARMPFM  360
APPQQGHGVS LPEQYAHFLG VNPHHHLQPP AHHHQRQHFA QGLGYYPLGA KALQQSPALH  420
HVSNGNAGGG TPAATANATP GNAIHPNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0854220.0KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982350.11e-176PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLW5F6Y70.0W5F6Y7_WHEAT; Uncharacterized protein
STRINGMLOC_7883.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-35phytochrome interacting factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]