PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_F8DEBE8E7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 425aa    MW: 46535.2 Da    PI: 5.3558
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_F8DEBE8E7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-1684144155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +    ++ k+ ++++lg ++t+e Aa+a++ a++k++g
  Traes_5AL_F8DEBE8E7.1  84 SIYRGVTRHRWTGRFEAHLWDkNCFtsiQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 144
                            57*******************5444666335446*************************98 PP

2AP255.81.2e-17187239156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAa+a++ a+ +++g+
  Traes_5AL_F8DEBE8E7.1 187 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAARAYDLAAIEYRGA 239
                            89****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-1184154No hitNo description
SuperFamilySSF541713.6E-1784153IPR016177DNA-binding domain
PfamPF008472.8E-1484144IPR001471AP2/ERF domain
SMARTSM003801.3E-2885158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1685152IPR001471AP2/ERF domain
PROSITE profilePS5103220.32385152IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-18187248IPR016177DNA-binding domain
CDDcd000189.64E-27187248No hitNo description
PfamPF008473.3E-13187238IPR001471AP2/ERF domain
SMARTSM003804.6E-28188252IPR001471AP2/ERF domain
PROSITE profilePS5103219.216188246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-19188246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
SPPPPPPQPS PSSSPACSLS PSPSSPSSSD SSSIAIPRKR ARTQKAGSAK AKAAPKRAKK  60
DASRSSKESD ASANGAAAAG KRSSIYRGVT RHRWTGRFEA HLWDKNCFTS IQNKKKGRQV  120
YLGAYDTEEA AARAYDLAAL KYWGPETTLN FTVDEYAKER SEMEGVSREE YLAALRRRSS  180
GFSRGVSKYR GVARHHHNGR WEARIGRVLG NKYLYLGTFD TQEEAARAYD LAAIEYRGAN  240
AVTNFDISRY LDQPQLLTQL EQGPQVVPAL QEELQHDHQS DNAVQELNSG EAQKPGSVNE  300
PIAVDDTDNT GDMGAPLVFD SGVEENLWSP CYELENFFGP NNSNSMNLSE YFNVNDATFE  360
SNIGYLFEGC PDIDDCSTRH GTGLAALGFL KEGDDNMKDV PDMDAELTPQ ANDVSCPPKM  420
ITVCN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642PRKRART
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554080.0AK355408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148209.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A3B6KDF80.0A0A3B6KDF8_WHEAT; Uncharacterized protein
STRINGTraes_5AL_F8DEBE8E7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-75AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]