PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_C1EC942D6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 113aa    MW: 12447.8 Da    PI: 8.8279
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_C1EC942D6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer39.51.3e-121844127
            ZF-HD_dimer  1 kekvrYkeClkNhAaslGghavDGCgE 27
                           +++vrY eC++NhAas+Gg+avDGC+ 
  Traes_5AL_C1EC942D6.1 18 CCGVRYGECRRNHAASTGGYAVDGCRX 44
                           5789*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-16143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.0E-102143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152311.2342375IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MKRLVVLRRC EPIVRFSCCG VRYGECRRNH AASTGGYAVD GCRXXXXXXX XXXXXLPPQL  60
PPQGAGLRGC MGLRVRYVVV VFKQQLGCCR CHSSPSSSCC FCCCCIMSTL GPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757151e-58AK375715.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3102E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_5AL_C1EC942D6.11e-62(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-08mini zinc finger 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]