PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_998CB34C7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 40aa    MW: 4748.54 Da    PI: 10.6066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_998CB34C7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.9e-091371354
                           HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           R+r+N++++ Lr+++Pk      +K++  +iL  +++Y+++L
  Traes_5AL_998CB34C7.1  1 RKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVNEL 37
                           89***************7.....6***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.328137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-10139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 40 aa     Download sequence    Send to blast
RKRLNDRLSM LRSIVPKITK MDRTSILGDT IDYVNELTER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674528e-51AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558868.17e-17PREDICTED: transcription factor bHLH61-like
SwissprotQ9LSE27e-16ICE1_ARATH; Transcription factor ICE1
TrEMBLW5EER72e-20W5EER7_WHEAT; Uncharacterized protein
TrEMBLW5EZQ71e-20W5EZQ7_WHEAT; Uncharacterized protein
STRINGBRADI1G76030.12e-16(Brachypodium distachyon)
STRINGMLOC_55768.12e-16(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.44e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]