PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_63F3CF30A.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 70aa    MW: 7820.83 Da    PI: 4.3685
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_63F3CF30A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.85.4e-0818462855
                    AP2 28 r.krfslgkfgtaeeAakaaiaarkkleg 55
                           +  +++lg ++ +e+Aa+a++ a++k++g
  Traes_5AL_63F3CF30A.2 18 StSSVYLGGYDMEEKAARAYDLAALKYWG 46
                           4489***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.731154IPR001471AP2/ERF domain
SMARTSM003801.9E-51360IPR001471AP2/ERF domain
PfamPF008476.5E-61446IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-111555IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-111955IPR001471AP2/ERF domain
CDDcd000181.18E-122255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
TALCMSFAGP FAWGSIVSTS SVYLGGYDME EKAARAYDLA ALKYWGASTH INFPVEDYQE  60
ELEVMKNMTR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-69AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156625.13e-27AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z025e-24CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A453LVR09e-30A0A453LVR0_AEGTS; Uncharacterized protein
TrEMBLA0A453LWN42e-28A0A453LWN4_AEGTS; Uncharacterized protein
TrEMBLA0A453LWU82e-28A0A453LWU8_AEGTS; Uncharacterized protein
STRINGTraes_5AL_63F3CF30A.23e-46(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.16e-25AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]