PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_331CE753D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 120aa    MW: 13479.2 Da    PI: 4.6384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_331CE753D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1162108455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++ ++Er RR+ +N+++  Lr+++P+      +K++Ka+i + A+ YI +Lq
  Traes_5AL_331CE753D.1  62 KNIINERHRRRMLNEKLYALRRVVPNI-----TKMDKASIIQDAIAYIEELQ 108
                            57799*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.21258107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1560115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-1161112No hitNo description
PfamPF000102.1E-962108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1364113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1365113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MASSDMDVSL DFSWEALVLE LGDADSMHLP AEDSLSGLCD DLTSSPDGAT SRSTKASSLE  60
RKNIINERHR RRMLNEKLYA LRRVVPNITK MDKASIIQDA IAYIEELQEQ ERQILAALRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651951e-129AK365195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580572.17e-38PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV99e-27BH035_ARATH; Transcription factor bHLH35
TrEMBLW5EW305e-83W5EW30_WHEAT; Uncharacterized protein
STRINGMLOC_13653.12e-63(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-23bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]