PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_06DC5CDA7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 190aa    MW: 20761.3 Da    PI: 5.1912
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_06DC5CDA7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.55.8e-077342855
                    AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                           +k+++lg f+++ eAa+a+++a+ +++g
  Traes_5AL_06DC5CDA7.1  7 KKYIYLGLFDSEVEAARAYDRAAIRFNG 34
                           59*********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.311142IPR001471AP2/ERF domain
CDDcd000181.55E-16144No hitNo description
SMARTSM003801.7E-11248IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-10543IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-11743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGQLLGKKYI YLGLFDSEVE AARAYDRAAI RFNGREAVTN FESSSYNGDA PPDAENEAIV  60
DADALDLDLR MSQPTAHDPK RDNIIAGLQL TFDSPESSTT MISSQPMSSS SSQWPVHQHG  120
TAVAPQQHQR LYPSACHGFY PNVQVSSSLR ERPPPPPPPP LLGARILGVV MCLLTEHLVS  180
WTDRACCVVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6970000.0AB697000.1 Triticum aestivum Q mRNA for transcription factor WAP2AQ, complete cds.
GenBankAY6459450.0AY645945.1 Triticum aestivum floral homeotic protein (Q) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154436.12e-90AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AMA93e-59AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB53e-59AP22_ORYSJ; APETALA2-like protein 2
TrEMBLM8BBJ21e-101M8BBJ2_AEGTA; Floral homeotic protein APETALA 2
STRINGTraes_5AL_06DC5CDA7.11e-140(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-22related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]