PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_E6210A614.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 322aa    MW: 36039 Da    PI: 7.6731
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_E6210A614.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.29e-3080183198
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k+ltpsdv+k++rlv+pk++ae++    g + e++  l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++
  Traes_4DS_E6210A614.1  80 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLEAGDVVHFER 167
                            99***************************9555668889************************************************8 PP

                            -SS..SEE..EEEEE- CS
                     B3  85 dgr..sefelvvkvfr 98 
                            ++   ++ +l+++ +r
  Traes_4DS_E6210A614.1 168 VRGlgTGDRLFIGCRR 183
                            8655455556666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-4075192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2877170IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-2778170No hitNo description
SMARTSM010191.4E-2180184IPR003340B3 DNA binding domain
PROSITE profilePS5086313.88880184IPR003340B3 DNA binding domain
PfamPF023624.3E-2780184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTSAWFSTPH TITTASYSYS IDRPSFCQRQ QEPNTFSTQQ LARMAMNPLS QEHPNAWPWG  60
VAMYTNLHYQ QYHYEKEHLF EKALTPSDVG KLNRLVIPKQ HAERCFPLGG DSGEKGLLLS  120
FDDEAGKPWR FRYSYWTSSQ SYVLTKGWSR YVKEKHLEAG DVVHFERVRG LGTGDRLFIG  180
CRRRGDVGAS TAVAPPPAVR VVPASGQSPR EQQQHQQPWS PMCYSTSTSY PTSPATSHAY  240
RRSAEHDHSD MHHAGESQWD ADTRSCSPAS APTRQLRLFG VNLDCGPEPE AEAAPATPAM  300
YGYVHQSPYA AVSPVPSNWG SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-50751883117B3 domain-containing transcription factor NGA1
5os9_B4e-50751883117B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752770.0AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174894.10.0B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-127Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A453HNM80.0A0A453HNM8_AEGTS; Uncharacterized protein
STRINGTraes_4DS_E6210A614.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-52B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]