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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_2E95B3A30.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CPP | ||||||||
Protein Properties | Length: 787aa MW: 85019 Da PI: 6.9544 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.4 | 4.5e-16 | 476 | 514 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk Traes_4DS_2E95B3A30.2 476 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 514 689**********************************96 PP | |||||||
2 | TCR | 49.2 | 1e-15 | 561 | 600 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce CkN+ Traes_4DS_2E95B3A30.2 561 RHKRGCNCKKSSCLKKYCECYQGGVGCSNNCRCETCKNTF 600 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.6E-17 | 475 | 516 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.145 | 476 | 601 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.9E-12 | 478 | 513 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-15 | 561 | 602 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.4E-11 | 563 | 599 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence Send to blast |
MDTPDRAAAP AAARAEDSPL FSFINSLSPI EPLKSAYSGN GLQAYHQSLN VTSVSSIFTS 60 PHHNAHKESK LSKSSFADYT ENELCMEDGT DKNKSPTSST AVRLFACTST ITRESHTMIT 120 CSVNEGIVDP PKGPNDFPQP GRFDSGSPDH NTAPCHGVSV RSDLKQDKCP KLETVQTTNN 180 TVEKRKCLFS SDMQLQDGCQ PAKENNEVMG CEWEDLVSVT SGELLAFDSS MDQHHTGVQL 240 AVNNAESCGY LLSKLAGGAD ISDRTHPATS SQAYYHEMVV GEDKTENGQL FPEDKKTILS 300 EEIQDNINEE NACIPLGCKV ETQQRGVRRR CLVFEAAGYS HRTVQKESVG DLSFSTCKGK 360 SSAQNHRNPG KTPSPHVFRG IGLHLNALAL TSKDKMACQD PLATALVPSL KTEQDVHGNL 420 LSAGGNFVHS GSGLLDLQMD NDDCSVGGFL GNDHNSSQSS SPPKKRRKSD NGDDDSCKRC 480 SCKKSKCLKL YCECFAAGVY CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI 540 RMSEAGQETQ EDPKNTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSNN CRCETCKNTF 600 GTRDVAVSAE NEEMKQEGDQ TESCEKEKEN DQQKANVHSE DHKLVELVVP ITPPLDVSSS 660 LLKQPNFSNA KPPRPCKARS GSSSRSSKAS ETVQSRKISK VGDSVFIEEM PDILREPSSP 720 GIVKTCSPNG KRVSPPHNAL SISPNRKGGR KLILKSIPSF PSLAGDTNGG SAICSSDSAT 780 ALALGPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-15 | 478 | 598 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-15 | 478 | 598 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 462 | 468 | PKKRRKS |
2 | 463 | 467 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375097 | 0.0 | AK375097.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085F14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167196.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A3B6JCA7 | 0.0 | A0A3B6JCA7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_2E95B3A30.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 5e-91 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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