PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_11C3B0459.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 217aa    MW: 23855.5 Da    PI: 6.2695
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_11C3B0459.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.1e-3871071100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrr+C+++Cv+ap+f++eq +++fa++hk+FGasn +kll +lp ++r++a+ ++ yeA+ar++dPvyG+v++i++lqqq+
  Traes_4DS_11C3B0459.1   7 PCGACKFLRRRCVNGCVFAPHFCHEQgAAHFAAIHKVFGASNASKLLMSLPATDRREAAVTISYEAQARQHDPVYGCVAHIFALQQQV 94 
                            7*************************89************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                             +l+a+l++lk++
  Traes_4DS_11C3B0459.1  95 VNLQAQLESLKAQ 107
                            *******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.4596108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTGFSSPCGA CKFLRRRCVN GCVFAPHFCH EQGAAHFAAI HKVFGASNAS KLLMSLPATD  60
RREAAVTISY EAQARQHDPV YGCVAHIFAL QQQVVNLQAQ LESLKAQEPV QGHTNTCSAS  120
SPEEDSIKAK VMAYQKGEAR MPQPGHSVKI ESESYFGNDG MACTSMQYSS QDYNSSHVYT  180
TGYPASFNDD SIHSSTMFPI DMQEYLQESG YYDTEGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3231037106LOB family transfactor Ramosa2.1
5ly0_B1e-3231037106LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182029.11e-163LOB domain-containing protein 14-like
TrEMBLA0A3B6JC481e-162A0A3B6JC48_WHEAT; Uncharacterized protein
STRINGTraes_4DS_11C3B0459.11e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-52LBD family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]