PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_07F394006.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 887aa    MW: 96095.9 Da    PI: 6.1334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_07F394006.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000746917291355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R+ i +++ eLre++P+ a     k  s  + Lek+v+++  Lq
  Traes_4DS_07F394006.2 691 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 729
                            67799************66.....66888899******999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-306160IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00323672729No hitNo description
PROSITE profilePS5088810.588678728IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-5691741IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-5691734IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAVGDALRRL CEDIGWSYAV FWKAIGAADP VHLVWEDGYC GHTPCPAGSE ASQARATELG  60
CSAAVDSICS LVRKDMAQQV HVVGEGTIGR VAFTGSHQWI IHGTADDHGL SSEVASEMHY  120
QFIAGIKTIA IIPVLPRGVL QLGSTGVVME NTSFVMHAKK LCSQLNQRSS MAASASVKST  180
SNQSRPLHGA SNIQAADNSF SQFPVIREQY RQSDSATASS SKSLNASLFE AAQQNGLTGR  240
EHIVYGKPND MFVQQASYCD SRLGSNTQSA AIGSDLVPSS LASVEQQQML MNTIGQLEFG  300
SGTDLARSAL LKSLLYRNPF MHETSDMKLS HGRVGLSQGT TGHGSYGFLP GSAGVVSTTL  360
CTSSQVSEQG SHSSSGMLRQ KQPPVSCNVP QSSEFTMKMV RQERRSSEGA LPVSSQSDVQ  420
VSNCLNGMSQ ENLLSRSGHM QKDQNTDRAN DPRVAVSTQG VKNMDGCMLP AMPSETAHSL  480
LLQPTWDNDL FDIFGSEFHQ LGHNVDANLV SSCDAKSHSL DRDATEPSIC LDSSSLFSSL  540
DNDFPCSGIF SLTDTDQLLD AVISNVNPSS KQSSDDNASC KTALTDIPNI SHFGLEELKQ  600
CDSSGIPSTV IKNESTQIVK QPYYFDKTED GCLSQNNGAQ KSQIRLWIEN GQNMKCESAS  660
ASNSKGLDTQ SKSNRKRSRP GESSKARPKD RQLIQDRIKE LREMVPNGAK QCSIDALLEK  720
TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV  780
EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGVM EARKSKIWAR FTVEANRDVT  840
RMEIFLSLVR LLEPNCDGSG AAENPNSVNM PLGLVRQPVI PATGGIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0PREDICTED: transcription factor LHW
TrEMBLW5ENQ50.0W5ENQ5_WHEAT; Uncharacterized protein
STRINGMLOC_60274.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-51conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]