PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_069F2900B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 199aa    MW: 20836.1 Da    PI: 4.8181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_069F2900B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08171197430
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                             h ++Er+RR++iN++f eL +++P +
  Traes_4DS_069F2900B.1 171 DHIMAERKRREKINQRFIELSTVIPGL 197
                            699**********************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.33E-7161198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.499167199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-8171197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6171197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-7172199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDDSALFMEW AMDTLEQEHP DPVVVVNGDS GDAAFPSLQA LREQRLVLEE LITGANPANS  60
GSSGETTDGS GGSGNFSSPA AMEHAVWPPS LNSARCAPRL SRNGGGTNLP VTSWNFCAAS  120
ALPASDGTLD SGSAGPVVSE TVYGSQPTRR AAARSPTGTG PVSSVPPYAQ DHIMAERKRR  180
EKINQRFIEL STVIPGLKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
2176181RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659950.0AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982204.13e-54PREDICTED: transcription factor bHLH18-like
TrEMBLW5ETP41e-145W5ETP4_WHEAT; Uncharacterized protein
STRINGGRMZM2G120021_P016e-47(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-11bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]