PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_DA70DBAFC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 598aa    MW: 65588.1 Da    PI: 7.0342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_DA70DBAFC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12444490455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Traes_4DL_DA70DBAFC.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 490
                            799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4954243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.101440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-14443494No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17444502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9444490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-18444506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MKTEIEEEGT RGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASG LVGLQNKLQD  60
LVEADGESLC WNYAIFWQLS HTKSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ  120
QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPRHVG GPGQVFATGA  180
PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR  240
SVFLGASSKK PASGKHDENG SAQISPGLAK IFGKDLNLSR PLVNTGALPL KMNERSWDMQ  300
KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKSETSQRS NGAAHSPGLS  360
PFQIRNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AAPLGGENGS VDGLCKEQVA  420
PTMEGQQPRK RGRKPANGRV EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAITHITDLQ KKLKEMESER DMFLESGMVD RRVQTPRPEV DIQVVQDEVL VRVMSPMDNY  540
PINNVFQAFE EAEVKVGESK IASNNGKVMH SFVIKSPGSE QQTREKLIAA MSRAMNSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-24542439192Transcription factor MYC3
4rs9_A2e-24542439192Transcription factor MYC3
4rqw_B2e-24542439192Transcription factor MYC3
4rqw_A2e-24542439192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3543650.0AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15.
GenBankAK2522400.0AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960675.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLW5EM950.0W5EM95_WHEAT; Uncharacterized protein
STRINGMLOC_33189.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-131bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]