PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_C2F35966E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 490aa    MW: 55105.7 Da    PI: 5.1359
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_C2F35966E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.12.3e-55201363118
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r+frkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e
  Traes_4DL_C2F35966E.2  20 KEaQTRWLRPTEICEILKNYRNFRIAPEPPNMPASGSLFLFDRKVLRFFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGE 107
                            5559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                            en +fqrr+yw+Lee++ +ivlvhylevk
  Traes_4DL_C2F35966E.2 108 ENINFQRRSYWMLEEDYMHIVLVHYLEVK 136
                            **************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.63915141IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4821135IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAEGRRYGIA PQLDMEQILK EAQTRWLRPT EICEILKNYR NFRIAPEPPN MPASGSLFLF  60
DRKVLRFFRK DGHNWRKKKD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKS SSRTRGHDNM LQGAYVDSPL SHLPSQSTDG ESSLSGRASE  180
YEAESADIYS GGAGYHSISR MQQHENGGGS IIDASVVSSY SPASSVGNHQ GLQATSPNTG  240
FYSHYQDNSP VIHNESTHGI TFNGPSTQFD LSSWNEMTKM NKGIHQLPPY QSHVPSEQRP  300
FTEGPGIESF SFDEVYSNGL DIKDDGHADT DREALWQLPS ANDGTTTEFL QLPSAIDGRT  360
TEFQLPSATD STFATVDSFE QNNKLLEEAI NFPVLKTQSS NLSDILKNSF KKSDSFTRWM  420
SKELAEVDDS QVKSSSALYW NSEDADNIIG ASSRDQLDQF TLDPMVAQDQ LFSITEYFPS  480
WTYAGSKTRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652100.0AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558617.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
TrEMBLW5ELF90.0W5ELF9_WHEAT; Uncharacterized protein
STRINGMLOC_38704.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.23e-86Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]