PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_ACF3BE9C5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 351aa    MW: 37593.1 Da    PI: 4.4145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_ACF3BE9C5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-11182224754
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+++L
  Traes_4DL_ACF3BE9C5.1 182 MAERRRRKRLNDRLSMLRSIMPKI-----TKMDRTSILGDTIDYVNEL 224
                            89*********************7.....6***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.646175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15178248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9181224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-12181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14182245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-4188229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDQLDEQSFL DELMSLRREE APAPAPWQAY PGSGMMTTSD LLFYGGEDVA EASSSMDLVG  60
PFQQPMAPLP AAPPHRSHEE YNFDCLSEVC NPYGSCGGVV PGPGVVHGVG QALSQDPLHD  120
AMAEDGTTSG NLHHGGGASS SPVPFVFGAG GAGENSEMIR GVFPGAYARS KLNGGTTSKN  180
LMAERRRRKR LNDRLSMLRS IMPKITKMDR TSILGDTIDY VNELTERIKT LEEEIGATPE  240
DLNLLNTTKN LSSGSSEEMP MRNSTKFVIE KQGDGETRID ICCATSPGVL ISTVSALEGL  300
GLEIEQCVVS CFGDFAMQAS CSQEEGRSQV TSTDEIKQAL FTSAGYGGRF L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674520.0AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150250.10.0transcription factor bHLH93-like isoform X1
SwissprotQ9LSL14e-54BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3B6JN390.0A0A3B6JN39_WHEAT; Uncharacterized protein
STRINGTraes_4DL_ACF3BE9C5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-56beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]