PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_6598DAF2E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 264aa    MW: 29622.6 Da    PI: 10.2556
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_6598DAF2E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.1e-1676135155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Traes_4DL_6598DAF2E.1  76 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 135
                            789******************544454478446*************************98 PP

2AP247.83.6e-15180229355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Traes_4DL_6598DAF2E.1 180 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 229
                            9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-1776145IPR016177DNA-binding domain
CDDcd000185.52E-2076145No hitNo description
PfamPF008473.9E-1277135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1677144IPR001471AP2/ERF domain
PROSITE profilePS5103218.71677143IPR001471AP2/ERF domain
SMARTSM003804.2E-2977149IPR001471AP2/ERF domain
PRINTSPR003672.8E-67889IPR001471AP2/ERF domain
CDDcd000182.11E-23178239No hitNo description
SuperFamilySSF541713.99E-18178239IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-18179237IPR001471AP2/ERF domain
PROSITE profilePS5103219.111179237IPR001471AP2/ERF domain
SMARTSM003802.1E-33179243IPR001471AP2/ERF domain
PfamPF008475.0E-10180229IPR001471AP2/ERF domain
PRINTSPR003672.8E-6219239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAAPMYSSA AGFDGSTNMS ISGIKSWLRQ SMYVPERSPA VPPSVHAAPS EPLPPLPAPC  60
VPVPRKLAQT FGQRTSQFRG VTRHRWTGRY EAHLWDNTCR KEGQTRKGRQ VYLGGYDKEE  120
KAARAYDLAA LKYWGPTTHI NFPLSTYEKE LEEMKHMTRQ EFIAHLRRNS SGFSRGASMY  180
RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL SAVTNFDISK  240
YDVKRICASS HLIGGDLACR RSPT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186422.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-126AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A453IWT00.0A0A453IWT0_AEGTS; Uncharacterized protein
STRINGTraes_4DL_6598DAF2E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-121AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]