PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_A021316A5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 155aa    MW: 17311.3 Da    PI: 7.7713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_A021316A5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.3e-1921109599
                            -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                     B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                            +t+ d+++++ +v+p +f+ ++ g k   s t+ le ++g++++v +  + ++++++l++GW+ Fv+an++ e+D+++F++ g+ +f 
  Traes_4BS_A021316A5.1  21 FTQIDSHSRHSVVIPESFV-NYfGWK--LSGTIELEAPNGNVYDVGI--TERKNKTLLRSGWEAFVDANHIVENDSLMFRYRGSCRF- 102
                            5778999************.552544..667****************..999999**************************998888. PP

                            .EEEEE-S CS
                     B3  92 lvvkvfrk 99 
                             +v vf++
  Traes_4BS_A021316A5.1 103 -KVAVFDS 109
                            .9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2216112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.21117110IPR003340B3 DNA binding domain
CDDcd100172.25E-1918108No hitNo description
Gene3DG3DSA:2.40.330.103.0E-2119112IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1220110IPR003340B3 DNA binding domain
PfamPF023624.0E-1721109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
NSCECCKRYW AHLHGKVKCF FTQIDSHSRH SVVIPESFVN YFGWKLSGTI ELEAPNGNVY  60
DVGITERKNK TLLRSGWEAF VDANHIVEND SLMFRYRGSC RFKVAVFDSS GCEKVVSCAR  120
ILTNTSDQEP STNSADISTS FSDGNTPSSA RARSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.11e-101B3 domain-containing protein Os03g0619600-like
SwissprotQ851W55e-44Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A446R6501e-104A0A446R650_TRITD; Uncharacterized protein
TrEMBLT1N5N71e-104T1N5N7_TRIUA; Uncharacterized protein
STRINGTraes_4BS_A021316A5.11e-113(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]