PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_9E4FBF387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 429aa    MW: 48129.3 Da    PI: 7.1492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_9E4FBF387.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.3e-13361141297
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            k + +++p++  ++    ++ s t++l  ++gr ++v +  +   g+ v+++GW  Fv a++++e+D+++F ++g+s+f   +++f
  Traes_4BS_9E4FBF387.1  36 K-NSIRIPRELSTHLR--SRISDTIKLSAPNGRAYDVVV--TWEFGELVIRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114
                            3.45999*99874444..45888****************..5556679***************************9999..66666 PP

2B3407.1e-13205290998
                            HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             + k + + +p + + +h +++++s  ++le ++g+ ++v+   +k+s+  +vl++ W  Fv an+++ +D ++F+   + +++l+v 
  Traes_4BS_9E4FBF387.1 205 VNVKDCSINIPLRLV-RHLKEEAGSAIIKLEAPDGNIYNVRA--SKHSEDqVVLQSDWDAFVAANHIQLNDLLIFHS--KGKTRLKVL 287
                            46678999*******.5555678999****************..7777777*************************3..356666776 PP

                            EE- CS
                     B3  96 vfr 98 
                            +++
  Traes_4BS_9E4FBF387.1 288 ALD 290
                            665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-1722119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.75824117IPR003340B3 DNA binding domain
SMARTSM010190.002727117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1627119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-1335115No hitNo description
PfamPF023623.3E-1136115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-17187300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-16191298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-15194290No hitNo description
PROSITE profilePS508639.686197292IPR003340B3 DNA binding domain
SMARTSM010195.2E-4199292IPR003340B3 DNA binding domain
PfamPF023622.0E-10205288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNEDCENCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNSIR IPRELSTHLR SRISDTIKLS  60
APNGRAYDVV VTWEFGELVI RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE  120
KMASCFQSPS EIFGIFPPSE PCDHHVLNGQ AAPNPRHVQT QVEFDYTMST GCHLTKSQDE  180
KVVEIARKIR SEIPLYVAIM KKLNVNVKDC SINIPLRLVR HLKEEAGSAI IKLEAPDGNI  240
YNVRASKHSE DQVVLQSDWD AFVAANHIQL NDLLIFHSKG KTRLKVLALD PSGCEKNSSC  300
LDTKNFSKTG EGSVWITDAR PCTVEIIDLT SSDDDRTERE DAGRSSGRRK QVPGSHAKAR  360
KMASASSPST KSGPDTHKLK HPISNNDNLQ GPYRPPYILA RGITLTGCVE KKVQEKVQAI  420
GSELPIYVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6INU10.0A0A3B6INU1_WHEAT; Uncharacterized protein
TrEMBLA0A446RUA10.0A0A446RUA1_TRITD; Uncharacterized protein
STRINGTraes_4BS_9E4FBF387.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-23B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]