PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_96AE357C6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 347aa    MW: 38068.7 Da    PI: 5.182
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_96AE357C6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.97.2e-3466165297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                            lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+
  Traes_4BS_96AE357C6.1  66 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHE 153
                            79*************************9977778***************************************8889*********** PP

                 DUF573  86 qkifelskkiWg 97 
                            q +fe+++ iW+
  Traes_4BS_96AE357C6.1 154 QAVFEIARNIWR 165
                            ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-3067164IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSAPV AAPASATATV  60
GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD TEPFYEEMRR RLQLDFSKSQ  120
LAEKLRRLKR KYRNCVERLR CSGNTFSFRS PHEQAVFEIA RNIWRPSSDK HGRDPNAADS  180
EDDATITATN AAANGDAKSP SSSKAHRRGR RRRTADLAAD ASEAPQPYTS GPMPVKTEDS  240
LPAFFPHVSM DGAEPVVAPV VNTESSVLTP LFKEMVRAML GIGGCPSPLG LGAKVPEQPS  300
AILGIPMEGE KWRQQRILEL EVYLRRIDLL QDEVKSALEE LKSTPPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509220.0AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228580.10.0PREDICTED: uncharacterized protein LOC100841096
TrEMBLW5EC780.0W5EC78_WHEAT; Uncharacterized protein
STRINGMLOC_10638.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-43DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]