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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_929E7B27B.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CPP | ||||||||
Protein Properties | Length: 835aa MW: 89962.6 Da PI: 7.2106 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.3 | 4.8e-16 | 478 | 516 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk Traes_4BS_929E7B27B.2 478 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 516 689**********************************96 PP | |||||||
2 | TCR | 49.1 | 1.1e-15 | 563 | 602 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce CkN+ Traes_4BS_929E7B27B.2 563 RHKRGCNCKKSSCLKKYCECYQGGVGCSNNCRCETCKNTF 602 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.6E-17 | 477 | 518 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.145 | 478 | 603 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.6E-12 | 480 | 515 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-15 | 563 | 604 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.6E-11 | 565 | 601 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MDTPDRAAAP AAAARAEDSP LFGFIDSLSP IEPLKSAYSG NGLQAYHQSL NAASVSSIFT 60 SPHHNAHKEG SKLSKSSFGD YTENEISMED GTDKNKSPTS STAVRLFACT STITRESHTM 120 ITCSVNEGIV DPPKGPNDLP QPGRFDSGSP DHNTAPCHGV SVRSDLKQDK CPKLEAVQAT 180 NNTVEKRKCL FSSDMQPQDG CQPAKENNEV MGCEWEDLVS VTSGELLAFD SSMDQHHTGV 240 QLAVNNAESC GYLLSKLAGG ADIPDRTHPT TSSQAYYHEM VVGEDKTENG QLFPEDKKTI 300 LSEEIQDNIN EENACIPLGC KVETQQRGVR RRCLVFEASG YSHRTVQKES VGDLSFSTSK 360 GKSSAQNHRN PGKTPSPHVF RGIGLHLNAL ALTSKDKMAC QDPLATALVP SLKTEQDVHG 420 NLLSAGGNFV HSGSGSLDLQ MDNDDCSVGG FLGNDHNSSQ SSSPPKKRRK SDNGDDDSCK 480 RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ GCLNKPIHEE IVLSTRKQIE FRNPLAFAPK 540 VIRMSEAGQE TQEDPKNTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS NNCRCETCKN 600 TFGTRDVAVS TENEEMKQEG DQTENREQEK ENDQQKANVH SEDHKLVELV VPITPPLDVS 660 SCLLKQPNFS NAKPPRPCKA RSGSSSRPSK ASETVQSRKT SKAGDSVFIE EMRGILREPS 720 SPGIVKTCSP NGKRVSPPHN ALGVSPSRKG GRKLILKSIP SFPSLAGDAN GGSATCSSDS 780 ATALALGSVL EAGLGSGLII RDRSTTCSPM MVRYLAYELR GKAQGTVREC HVMSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-15 | 480 | 600 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-15 | 480 | 600 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 464 | 470 | PKKRRKS |
2 | 465 | 469 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375097 | 0.0 | AK375097.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085F14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167196.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A3B6IJJ7 | 0.0 | A0A3B6IJJ7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_929E7B27B.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-77 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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