PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_5D04C29FF.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 540aa    MW: 61750.3 Da    PI: 6.2649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_5D04C29FF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15341111497
                            T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            + +++p +f++++ g+   +++++le+++g s+++ +   k++++ vl++GW  Fvk  +L+  D vvF+++g+s+f   v vf
  Traes_4BS_5D04C29FF.2  34 QEMIVPDEFLRRFRGE--IPREIKLETRNGHSYTIGV--AKYPDKLVLQAGWGLFVKTYDLRMDDCVVFRYKGNSQF--GVIVF 111
                            46899********776..6779***************..**********************************9999..55555 PP

2B349.95.9e-16361452196
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                            f+ v+ + +v+ ++ l+++kk++++h g+ke+   +   ++ g++W+v++  + +++   + +GW++Fvk+n++++gD+++F+l +  
  Traes_4BS_5D04C29FF.2 361 FVAVMRRFNVTGTCTLTFSKKYVQTHVGDKERR--VC-LQRFGKRWDVQF--SSSREVKRIVSGWRKFVKDNDVETGDICIFELLKId 443
                            5566777789999*************7787664..66.557*********..6666667789*********************76443 PP

                            SEE..EEEE CS
                     B3  88 sefelvvkv 96 
                            +  ++ v++
  Traes_4BS_5D04C29FF.2 444 EMCTMEVHI 452
                            544566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-1819113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.89821114IPR003340B3 DNA binding domain
SMARTSM010192.7E-623117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-1723112IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-1135110IPR003340B3 DNA binding domain
CDDcd100171.70E-1536112No hitNo description
Gene3DG3DSA:2.40.330.101.3E-19353455IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19356445IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-18359453No hitNo description
SMARTSM010194.4E-7361456IPR003340B3 DNA binding domain
PfamPF023627.3E-14361453IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07361456IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGCERCERRD ELDYCNLDDR EKYFLMFIVD DCGQEMIVPD EFLRRFRGEI PREIKLETRN  60
GHSYTIGVAK YPDKLVLQAG WGLFVKTYDL RMDDCVVFRY KGNSQFGVIV FDRFGREKAF  120
SVITDNAPPV QESHNRGTEN VDRSHGHSQP MEVQSPIATA NHSDGRPQPM RMQPPTENAN  180
PSHAHPQPMR MQPPTENLDD PVGFSRPMEM QPPTENVDHL FGHSQPMQMQ PSTEAVDHFA  240
QMQPSTEAVD HSNGHAQTMR MQPSSEVVDH SNDHAQTMQM QLFCRPTKLR QTKLQWDYSS  300
KGNKTATSPS DTPRDSLSSE HDIEGCASPR YTLTYNSSLN TVQKEEIEEK VKSIHKDNPI  360
FVAVMRRFNV TGTCTLTFSK KYVQTHVGDK ERRVCLQRFG KRWDVQFSSS REVKRIVSGW  420
RKFVKDNDVE TGDICIFELL KIDEMCTMEV HIIHAKDFDR PSQIGGWSVE GRCKEATTKT  480
VEPSHSRPQL VQMQLCNASV EDSYSLPQPM EMQSPSTERK IRVETVNSSP GNEGDSSMSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174612.10.0putative B3 domain-containing protein Os08g0325100
TrEMBLA0A446RU730.0A0A446RU73_TRITD; Uncharacterized protein
STRINGTraes_4BS_5D04C29FF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-14B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]